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Eng. The accuracy measure is used in the classification phase. The Shearlet transform FS method showed better performances compared to several FS methods. It is calculated between each feature for all classes, as in Eq. kharrat and Mahmoud32proposed an FS method based on a hybrid of Simulated Annealing (SA) and GA to classify brain tumors using MRI. Deep learning plays an important role in COVID-19 images diagnosis. Also, in12, an Fs method based on SVM was proposed to detect Alzheimers disease from SPECT images. The proposed IMF approach is employed to select only relevant and eliminate unnecessary features. Sci. Automated detection of alzheimers disease using brain mri imagesa study with various feature extraction techniques. The proposed CNN architecture for Task 2 consists of 14 weighted layers, in which there are three convolutional layers and one fully connected layer, as shown in Fig. These datasets contain hundreds of frontal view X-rays and considered the largest public resource for COVID-19 image data. Metric learning Metric learning can create a space in which image features within the. contributed to preparing results and the final figures. COVID-19 tests are currently hard to come by there are simply not enough of them and they cannot be manufactured fast enough, which is causing panic. COVID-19 is the most transmissible disease, caused by the SARS-CoV-2 virus that severely infects the lungs and the upper respiratory tract of the human body.This virus badly affected the lives and wellness of millions of people worldwide and spread widely. The . In this subsection, the results of FO-MPA are compared against most popular and recent feature selection algorithms, such as Whale Optimization Algorithm (WOA)49, Henry Gas Solubility optimization (HGSO)50, Sine cosine Algorithm (SCA), Slime Mould Algorithm (SMA)51, Particle Swarm Optimization (PSO), Grey Wolf Optimization (GWO)52, Harris Hawks Optimization (HHO)53, Genetic Algorithm (GA), and basic MPA. Article To evaluate the performance of the proposed model, we computed the average of both best values and the worst values (Max) as well as STD and computational time for selecting features. 132, 8198 (2018). Cite this article. For example, Da Silva et al.30 used the genetic algorithm (GA) to develop feature selection methods for ranking the quality of medical images. According to the best measure, the FO-MPA performed similarly to the HHO algorithm, followed by SMA, HGSO, and SCA, respectively. In this paper, we used two different datasets. J. Comput. Arijit Dey, Soham Chattopadhyay, Ram Sarkar, Dandi Yang, Cristhian Martinez, Jesus Carretero, Jess Alejandro Alzate-Grisales, Alejandro Mora-Rubio, Reinel Tabares-Soto, Lo Dumortier, Florent Gupin, Thomas Grenier, Linda Wang, Zhong Qiu Lin & Alexander Wong, Afnan Al-ali, Omar Elharrouss, Somaya Al-Maaddeed, Robbie Sadre, Baskaran Sundaram, Daniela Ushizima, Zahid Ullah, Muhammad Usman, Jeonghwan Gwak, Scientific Reports Intell. \end{aligned} \end{aligned}$$, $$\begin{aligned} \begin{aligned} U_{i}(t+1)&= \frac{1}{1!} Future Gener. For the special case of \(\delta = 1\), the definition of Eq. & Wang, W. Medical image segmentation using fruit fly optimization and density peaks clustering. However, using medical imaging, chest CT, and chest X-ray scan can play a critical role in COVID-19 diagnosis. PubMed For more analysis of feature selection algorithms based on the number of selected features (S.F) and consuming time, Fig. In Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 770778 (2016). where \(R\in [0,1]\) is a random vector drawn from a uniform distribution and \(P=0.5\) is a constant number. This combination should achieve two main targets; high performance and resource consumption, storage capacity which consequently minimize processing time. 2 (left). Two real datasets about COVID-19 patients are studied in this paper. As Inception examines all X-ray images over and over again in each epoch during the training, these rapid ups and downs are slowly minimized in the later part of the training. Syst. We can call this Task 2. In this paper, each feature selection algorithm were exposed to select the produced feature vector from Inception aiming at selecting only the most relevant features. Image Anal. Robustness-driven feature selection in classification of fibrotic interstitial lung disease patterns in computed tomography using 3d texture features. & Cao, J. The name "pangolin" comes from the Malay word pengguling meaning "one who rolls up" from guling or giling "to roll"; it was used for the Sunda pangolin (Manis javanica). You are using a browser version with limited support for CSS. All authors discussed the results and wrote the manuscript together. A survey on deep learning in medical image analysis. In Iberian Conference on Pattern Recognition and Image Analysis, 176183 (Springer, 2011). Diagnosis of parkinsons disease with a hybrid feature selection algorithm based on a discrete artificial bee colony. Simonyan, K. & Zisserman, A. Also, they require a lot of computational resources (memory & storage) for building & training. The authors declare no competing interests. While no feature selection was applied to select best features or to reduce model complexity. Besides, the used statistical operations improve the performance of the FO-MPA algorithm because it supports the algorithm in selecting only the most important and relevant features. They applied the SVM classifier for new MRI images to segment brain tumors, automatically. Nguyen, L.D., Lin, D., Lin, Z. To obtain The proposed IFM approach is summarized as follows: Extracting deep features from Inception, where about 51 K features were extracted. EMRes-50 model . . the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in If the random solution is less than 0.2, it converted to 0 while the random solution becomes 1 when the solutions are greater than 0.2. Zhang et al.16 proposed a kernel feature selection method to segment brain tumors from MRI images. The second one is based on Matlab, where the feature selection part (FO-MPA algorithm) was performed. Early diagnosis, timely treatment, and proper confinement of the infected patients are some possible ways to control the spreading of . Whereas, FO-MPA, MPA, HGSO, and WOA showed similar STD results. Use of chest ct in combination with negative rt-pcr assay for the 2019 novel coronavirus but high clinical suspicion. Image Underst. The results showed that the proposed approach showed better performances in both classification accuracy and the number of extracted features that positively affect resource consumption and storage efficiency. However, it has some limitations that affect its quality. Int. They concluded that the hybrid method outperformed original fuzzy c-means, and it had less sensitive to noises. Stage 2: The prey/predator in this stage begin exploiting the best location that detects for their foods. Abadi, M. et al. Stage 2 has been executed in the second third of the total number of iterations when \(\frac{1}{3}t_{max}< t< \frac{2}{3}t_{max}\). https://keras.io (2015). Future Gener. Accordingly, the FC is an efficient tool for enhancing the performance of the meta-heuristic algorithms by considering the memory perspective during updating the solutions. IEEE Trans. Eur. E. B., Traina-Jr, C. & Traina, A. J. a cough chills difficulty breathing tiredness body aches headaches a new loss of taste or smell a sore throat nausea and vomiting diarrhea Not everyone with COVID-19 develops all of these. Covid-19 Classification Using Deep Learning in Chest X-Ray Images Abstract: Covid-19 virus, which has emerged in the Republic of China in an undetermined cause, has affected the whole world quickly. Therefore, in this paper, we propose a hybrid classification approach of COVID-19. Refresh the page, check Medium 's site status, or find something interesting. The MCA-based model is used to process decomposed images for further classification with efficient storage. The predator tries to catch the prey while the prey exploits the locations of its food. Imaging 29, 106119 (2009). Four measures for the proposed method and the compared algorithms are listed. So, transfer learning is applied by transferring weights that were already learned and reserved into the structure of the pre-trained model, such as Inception, in this paper. Softw. Accordingly, the prey position is upgraded based the following equations. Multimedia Tools Appl. 97, 849872 (2019). Med. arXiv preprint arXiv:1409.1556 (2014). ADS The Marine Predators Algorithm (MPA)is a recently developed meta-heuristic algorithm that emulates the relation among the prey and predator in nature37. Software available from tensorflow. Ozturk et al. Rep. 10, 111 (2020). The 1360 revised papers presented in these proceedings were carefully reviewed and selected from . Narayanan, S.J., Soundrapandiyan, R., Perumal, B. Ge, X.-Y. (4). all above stages are repeated until the termination criteria is satisfied. Detecting COVID-19 at an early stage is essential to reduce the mortality risk of the patients. The MPA starts with the initialization phase and then passing by other three phases with respect to the rational velocity among the prey and the predator. Biomed. Fractional-order calculus (FC) gains the interest of many researchers in different fields not only in the modeling sectors but also in developing the optimization algorithms. Methods Med. Support Syst. Extensive comparisons had been implemented to compare the FO-MPA with several feature selection algorithms, including SMA, HHO, HGSO, WOA, SCA, bGWO, SGA, BPSO, besides the classic MPA. \(r_1\) and \(r_2\) are the random index of the prey. Feature selection based on gaussian mixture model clustering for the classification of pulmonary nodules based on computed tomography. Taking into consideration the current spread of COVID-19, we believe that these techniques can be applied as a computer-aided tool for diagnosing this virus. For instance,\(1\times 1\) conv. The next process is to compute the performance of each solution using fitness value and determine which one is the best solution. Corona Virus lung infected X-Ray Images accessible by Kaggle a complete 590 images, which classified in 2 classes: typical and Covid-19. & Zhu, Y. Kernel feature selection to fuse multi-spectral mri images for brain tumor segmentation. JMIR Formative Research - Classifying COVID-19 Patients From Chest X-ray Images Using Hybrid Machine Learning Techniques: Development and Evaluation Published on 28.2.2023 in Vol 7 (2023) Preprints (earlier versions) of this paper are available at https://preprints.jmir.org/preprint/42324, first published August 31, 2022 . Nevertheless, a common mistake in COVID-19 dataset fusion, mainly on classification tasks, is that by mixing many datasets of COVID-19 and using as Control images another dataset, there will be . For example, as our input image has the shape \(224 \times 224 \times 3\), Nasnet26 produces 487 K features, Resnet25 and Xception29 produce about 100 K features and Mobilenet27 produces 50 K features, while FO-MPA produces 130 and 86 features for both dataset1 and dataset 2, respectively. <span> <h5>Background</h5> <p>The COVID19 pandemic has precipitated global apprehensions about increased fatalities and raised concerns about gaps in healthcare . 43, 635 (2020). Some people say that the virus of COVID-19 is. In transfer learning, a CNN which was previously trained on a large & diverse image dataset can be applied to perform a specific classification task by23. I. S. of Medical Radiology. In Proceedings of the IEEE Conference on computer vision and pattern recognition workshops, 806813 (2014). COVID-19 image classification using deep features and fractional-order marine predators algorithm, $$\begin{aligned} \chi ^2=\sum _{k=1}^{n} \frac{(O_k - E_k)^2}{E_k} \end{aligned}$$, $$\begin{aligned} ni_{j}=w_{j}C_{j}-w_{left(j)}C_{left(j)}-w_{right(j)}C_{right(j)} \end{aligned}$$, $$\begin{aligned} fi_{i}=\frac{\sum _{j:node \mathbf \ {j} \ splits \ on \ feature \ i}ni_{j}}{\sum _{{k}\in all \ nodes }ni_{k}} \end{aligned}$$, $$\begin{aligned} normfi_{i}=\frac{fi_{i}}{\sum _{{j}\in all \ nodes }fi_{j}} \end{aligned}$$, $$\begin{aligned} REfi_{i}=\frac{\sum _{j \in all trees} normfi_{ij}}{T} \end{aligned}$$, $$\begin{aligned} D^{\delta }(U(t))=\lim \limits _{h \rightarrow 0} \frac{1}{h^\delta } \sum _{k=0}^{\infty }(-1)^{k} \begin{pmatrix} \delta \\ k\end{pmatrix} U(t-kh), \end{aligned}$$, $$\begin{aligned} \begin{pmatrix} \delta \\ k \end{pmatrix}= \frac{\Gamma (\delta +1)}{\Gamma (k+1)\Gamma (\delta -k+1)}= \frac{\delta (\delta -1)(\delta -2)\ldots (\delta -k+1)}{k! Automatic COVID-19 lung images classification system based on convolution neural network. Mirjalili, S., Mirjalili, S. M. & Lewis, A. Grey wolf optimizer. Mirjalili, S. & Lewis, A. AMERICAN JOURNAL OF EMERGENCY MEDICINE COVID-19: Facemask use prevalence in international airports in Asia, Europe and the Americas, March 2020 In this work, we have used four transfer learning models, VGG16, InceptionV3, ResNet50, and DenseNet121 for the classification tasks. Automatic CNN-based Chest X-Ray (CXR) image classification for detecting Covid-19 attracted so much attention. To segment brain tissues from MRI images, Kong et al.17 proposed an FS method using two methods, called a discriminative clustering method and the information theoretic discriminative segmentation. In general, MPA is a meta-heuristic technique that simulates the behavior of the prey and predator in nature37. Acharya et al.11 applied different FS methods to classify Alzheimers disease using MRI images. Memory FC prospective concept (left) and weibull distribution (right). Eng. Google Scholar. Chong et al.8 proposed an FS model, called Robustness-Driven FS (RDFS) to select futures from lung CT images to classify the patterns of fibrotic interstitial lung diseases. Using X-ray images we can train a machine learning classifier to detect COVID-19 using Keras and TensorFlow. Keywords - Journal. However, the proposed IMF approach achieved the best results among the compared algorithms in least time. COVID 19 X-ray image classification. The parameters of each algorithm are set according to the default values. (3), the importance of each feature is then calculated. This algorithm is tested over a global optimization problem. Very deep convolutional networks for large-scale image recognition. Da Silva, S. F., Ribeiro, M. X., Neto, Jd. They were manually aggregated from various web based repositories into a machine learning (ML) friendly format with accompanying data loader code. In order to normalize the values between 0 and 1 by dividing by the sum of all feature importance values, as in Eq. Lilang Zheng, Jiaxuan Fang, Xiaorun Tang, Hanzhang Li, Jiaxin Fan, Tianyi Wang, Rui Zhou, Zhaoyan Yan: PVT-COV19D: COVID-19 Detection Through Medical Image Classification Based on Pyramid Vision Transformer. The results are the best achieved on these datasets when compared to a set of recent feature selection algorithms. }\delta (1-\delta )(2-\delta ) U_{i}(t-2)\\&\quad + \frac{1}{4! Key Definitions. Mobilenets: Efficient convolutional neural networks for mobile vision applications. Brain tumor segmentation with deep neural networks. Inception architecture is described in Fig. Harikumar, R. & Vinoth Kumar, B. So, based on this motivation, we apply MPA as a feature selector from deep features that produced from CNN (largely redundant), which, accordingly minimize capacity and resources consumption and can improve the classification of COVID-19 X-ray images. (2) calculated two child nodes. From Fig. volume10, Articlenumber:15364 (2020) With the help of numerous algorithms in AI, modern COVID-19 cases can be detected and managed in a classified framework. In addition, up to our knowledge, MPA has not applied to any real applications yet. Radiology 295, 2223 (2020). Li et al.34 proposed a self-adaptive bat algorithm (BA) to address two problems in lung X-ray images, rebalancing, and feature selection. arXiv preprint arXiv:2003.11597 (2020). Cohen, J.P., Morrison, P. & Dao, L. Covid-19 image data collection. Table2 depicts the variation in morphology of the image, lighting, structure, black spaces, shape, and zoom level among the same dataset, as well as with the other dataset. Faramarzi et al.37 implement this feature via saving the previous best solutions of a prior iteration, and compared with the current ones; the solutions are modified based on the best one during the comparison stage. Among the FS methods, the metaheuristic techniques have been established their performance overall other FS methods when applied to classify medical images. Evaluate the proposed approach by performing extensive comparisons to several state-of-art feature selection algorithms, most recent CNN architectures and most recent relevant works and existing classification methods of COVID-19 images. It achieves a Dice score of 0.9923 for segmentation, and classification accuracies of 0. 115, 256269 (2011). Whereas the worst one was SMA algorithm. The results indicate that all CNN-based architectures outperform the ViT-based architecture in the binary classification of COVID-19 using CT images. Besides, all algorithms showed the same statistical stability in STD measure, except for HHO and HGSO. Thank you for visiting nature.com. Finally, the sum of the features importance value on each tree is calculated then divided by the total number of trees as in Eq. The model was developed using Keras library47 with Tensorflow backend48. Remainder sections are organized as follows: Material and methods sectionpresents the methodology and the techniques used in this work including model structure and description. On the second dataset, dataset 2 (Fig. Faramarzi, A., Heidarinejad, M., Mirjalili, S. & Gandomi, A. H. Marine predators algorithm: a nature-inspired metaheuristic. The GL in the discrete-time form can be modeled as below: where T is the sampling period, and m is the length of the memory terms (memory window). Going deeper with convolutions. One of the main disadvantages of our approach is that its built basically within two different environments. Comput. More so, a combination of partial differential equations and deep learning was applied for medical image classification by10. While55 used different CNN structures. In9, to classify ultrasound medical images, the authors used distance-based FS methods and a Fuzzy Support Vector Machine (FSVM). (18)(19) for the second half (predator) as represented below. While the second half of the agents perform the following equations. Dhanachandra, N. & Chanu, Y. J. 22, 573577 (2014). The memory terms of the prey are updated at the end of each iteration based on first in first out concept. This means we can use pre-trained model weights, leveraging all of the time and data it took for training the convolutional part, and just remove the FCN layer. Future Gener. Kong, Y., Deng, Y. Figure7 shows the most recent published works as in54,55,56,57 and44 on both dataset 1 and dataset 2. Credit: NIAID-RML Classification of COVID-19 X-ray images with Keras and its potential problem | by Yiwen Lai | Analytics Vidhya | Medium Write Sign up 500 Apologies, but something went wrong on our end.. For fair comparison, each algorithms was performed (run) 25 times to produce statistically stable results.The results are listed in Tables3 and4. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. They applied a fuzzy decision tree classifier, and they found that fuzzy PSO improved the classification accuracy. (20), \(FAD=0.2\), and W is a binary solution (0 or 1) that corresponded to random solutions. 152, 113377 (2020). Thereafter, the FO-MPA parameters are applied to update the solutions of the current population. Abbas, A., Abdelsamea, M.M. & Gaber, M.M. Classification of covid-19 in chest x-ray images using detrac deep convolutional neural network.